Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
410
ChIP-seq
29
DNase-seq
21
ATAC-seq
1
FAIRE-seq
Assay category
410
DNA binding
51
DNA accessibility
Target of assay
338
transcription factor
81
recombinant protein
71
RNA binding protein
67
histone
67
histone modification
35
narrow histone mark
32
broad histone mark
31
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
47
June, 2019
27
December, 2018
23
October, 2019
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1373
bam
1303
bigWig
869
fastq
757
bed narrowPeak
524
tsv
461
bigBed narrowPeak
153
zippedFastqFolder
134
tagAlign
94
bed broadPeak
94
bigBed broadPeak
61
bed bed3+
13
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
461
Homo sapiens
Biosample type
tissue
355
cell line
90
primary cell
16
in vitro differentiated cells
Organ
309
liver
73
epithelium
54
blood
54
bodily fluid
26
pancreas
21
vasculature
17
blood vessel
17
connective tissue
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
461
AMP
Genome assembly (visualization)
450
hg19
426
GRCh38
Lab
461
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
biosample_type!
tissue
month_released!
August, 2017
BIOSAMPLE
ASSAY
461 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
293
GM12878
54
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
endothelial cell of umbilical vein
10
2
1
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
mesenchymal stem cell
6
pancreatic beta cell
6
+ See 23 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
2
See all biosamples
Download