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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
Hi-C
Assay category
9
3D chromatin structure
Date released
March, 2020
3
October, 2019
3
October, 2022
1
August, 2021
1
March, 2023
1
November, 2019
Available data
1478
bam
1388
bigWig
981
fastq
832
bed narrowPeak
507
tsv
481
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
109
bed broadPeak
109
bigBed broadPeak
68
bed bed3+
11
bed bedMethyl
11
bigBed bedMethyl
9
hic
8
bedpe bed3+
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
1
vcf
Organism
9
Homo sapiens
Biosample type
5
primary cell
tissue
2
cell line
2
in vitro differentiated cells
Organ
5
epithelium
4
pancreas
1
blood vessel
1
liver
1
vasculature
1
vein
Project
5
AMP
3
HPAP
1
ITG
Genome assembly (visualization)
8
hg19
1
GRCh38
Lab
4
AMP-T2D consortium
3
Klaus Kaestner, Upenn
1
Bing Ren, UCSD
1
ITG
Audit category:
4
audit script error
3
inconsistent ontology term
biosample_type!
tissue
month_released!
March, 2020
BIOSAMPLE
ASSAY
9 results
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Clear Filters
Hi-C
primary cell
chondrocytes
1
endothelial cell of umbilical vein
1
pancreatic acinar cell
1
pancreatic alpha cell
1
pancreatic beta cell
1
cell line
EndoC_BH1
1
HepG2
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
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