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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
190
total RNA-seq
86
ChIP-seq
35
snATAC-seq
33
single cell RNA-seq
16
pCHi-C
10
ATAC-seq
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
227
Transcription
86
DNA binding
45
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
152
May, 2021
81
February, 2023
45
February, 2021
45
May, 2020
40
September, 2020
8
January, 2021
7
August, 2020
5
March, 2023
3
March, 2020
3
October, 2022
Available data
194
bigWig
184
bam
169
fastq
zippedFastqFolder
104
tsv
86
bed narrowPeak
84
tagAlign
4
hic
3
bedpe bed3+
3
cool
Organism
385
Homo sapiens
Biosample type
376
primary cell
tissue
11
cell line
2
stem cell
Organ
76
epithelium
76
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
AMP
213
T1D
171
HPAP
4
community
1
ITG
Genome assembly (visualization)
195
GRCh38
187
hg19
Lab
209
Kyle Gaulton, UCSD
171
Klaus Kaestner, Upenn
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
30
audit script error
9
inconsistent ontology term
biosample_type!
tissue
month_released!
September, 2018
award.project!
AMP
files.file_type!
zippedFastqFolder
BIOSAMPLE
ASSAY
389 results
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total RNA-seq
ChIP-seq
snATAC-seq
single cell RNA-seq
pCHi-C
ATAC-seq
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
27
33
pancreatic alpha cell
42
7
6
1
exocrine cell
39
pancreatic beta cell
11
3
1
+ See 37 more…
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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