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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ChIP-seq
16
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
43
DNA binding
16
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
11
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
357
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
82
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
43
April, 2018
33
December, 2017
31
July, 2019
28
December, 2018
26
February, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
5
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
42
bed narrowPeak
41
bam
39
bigWig
24
tagAlign
16
tsv
5
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
82
Homo sapiens
Biosample type
tissue
42
in vitro differentiated cells
36
cell line
4
primary cell
Organ
35
liver
embryo
6
epithelium
4
connective tissue
2
kidney
2
pancreas
Project
82
AMP
Genome assembly (visualization)
51
hg19
33
GRCh38
Lab
44
AMP-T2D consortium
34
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
organ_slims!
embryo
BIOSAMPLE
ASSAY
82 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
in vitro differentiated cells
neural progenitor cell
21
7
10
adipocyte
1
1
osteoblast
1
1
cell line
HepG2
18
9
2
1
1
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
primary cell
hepatocyte
4
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