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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
ChIP-seq
24
total RNA-seq
12
ATAC-seq
5
STARR-seq
4
Capture-C
1
Hi-C
1
whole genome sequencing assay
Assay category
32
DNA binding
24
Transcription
12
DNA accessibility
1
3D chromatin structure
1
DNA sequencing
Target of assay
20
histone
20
histone modification
12
control
narrow histone mark
11
transcription factor
9
broad histone mark
1
RNA binding protein
Date released
314
November, 2017
295
May, 2021
170
February, 2021
148
May, 2020
134
May, 2022
110
February, 2023
89
August, 2017
79
August, 2021
62
November, 2018
60
October, 2019
59
September, 2020
58
September, 2018
48
July, 2018
44
June, 2019
43
April, 2018
32
December, 2017
31
February, 2018
31
July, 2019
28
December, 2018
23
March, 2020
22
January, 2019
17
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
September, 2017
4
August, 2018
4
May, 2019
4
October, 2022
3
June, 2018
2
October, 2018
Available data
40
bam
36
bigWig
31
bed narrowPeak
24
tsv
15
tagAlign
3
bed bed3+
1
bedpe bed3+
1
hic
1
vcf
Organism
79
Homo sapiens
Biosample type
tissue
42
cell line
35
in vitro differentiated cells
2
primary cell
Organ
31
liver
8
embryo
4
connective tissue
4
epithelium
2
kidney
2
pancreas
Project
79
AMP
Genome assembly (visualization)
48
hg19
32
GRCh38
Lab
43
AMP-T2D consortium
32
Bing Ren, UCSD
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
79 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
STARR-seq
Capture-C
Hi-C
whole genome sequencing assay
cell line
HepG2
16
9
2
1
1
H1-hESC
8
EndoC_BH1
2
HEK293T
2
Synthesized DNA
1
in vitro differentiated cells
neural progenitor cell
14
7
10
adipocyte
1
1
osteoblast
1
1
primary cell
hepatocyte
2
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