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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
35
ChIP-seq
27
snATAC-seq
14
ATAC-seq
12
single cell RNA-seq
6
WGBS
2
pCHi-C
1
Hi-C
Assay category
113
Transcription
41
DNA accessibility
35
DNA binding
6
DNA methylation
1
3D chromatin structure
Target of assay
30
transcription factor
3
control
2
RNA binding protein
2
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
147
bam
134
bigWig
107
tsv
73
fastq
42
bed narrowPeak
27
bigBed narrowPeak
8
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
198
Homo sapiens
Biosample type
tissue
124
cell line
48
primary cell
26
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
27
blood
27
bodily fluid
11
connective tissue
3
liver
Project
153
AMP
45
HPAP
Genome assembly (visualization)
149
hg19
143
GRCh38
Lab
153
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
27
audit script error
1
inconsistent control
1
inconsistent replicate
biosample_type!
tissue
BIOSAMPLE
ASSAY
198 results
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Clear Filters
total RNA-seq
ChIP-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
WGBS
pCHi-C
Hi-C
cell line
smooth muscle cell of the coronary artery
52
6
8
GM12878
27
EndoC_BH1
26
HepG2
1
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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