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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ATAC-seq
52
total RNA-seq
50
single cell RNA-seq
1
pCHi-C
Assay category
102
Transcription
100
DNA accessibility
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
143
bam
143
bigWig
101
tsv
48
fastq
Organism
203
Homo sapiens
Biosample type
tissue
200
primary cell
2
in vitro differentiated cells
1
cell line
Organ
38
epithelium
37
pancreas
6
liver
2
connective tissue
Project
158
AMP
45
T1D
Genome assembly (visualization)
143
hg19
98
GRCh38
Lab
158
AMP-T2D consortium
45
Kyle Gaulton, UCSD
Audit category:
16
inconsistent ontology term
2
audit script error
biosample_type!
tissue
BIOSAMPLE
ASSAY
203 results
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Clear Filters
ATAC-seq
total RNA-seq
single cell RNA-seq
pCHi-C
primary cell
naive thymus-derived CD4-positive, alpha-beta T cell
22
1
CD4-positive, alpha-beta memory T cell
22
macrophage
11
pancreatic beta cell
9
pancreatic alpha cell
7
+ See 40 more…
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
cell line
HepG2
1
See all biosamples
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