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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
95
total RNA-seq
24
ATAC-seq
24
ChIP-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
95
Transcription
24
DNA accessibility
24
DNA binding
Target of assay
16
histone
16
histone modification
8
broad histone mark
8
control
8
narrow histone mark
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
115
fastq
39
bam
34
bigWig
27
tsv
18
bed narrowPeak
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
txt
Organism
148
Homo sapiens
Biosample type
tissue
88
primary cell
55
in vitro differentiated cells
6
cell line
Organ
38
epithelium
38
pancreas
13
connective tissue
13
embryo
Project
76
HPAP
68
AMP
5
T1D
Genome assembly (visualization)
43
hg19
31
GRCh38
Lab
76
Klaus Kaestner, Upenn
65
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
Audit category:
2
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
149 results
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Clear Filters
total RNA-seq
ATAC-seq
ChIP-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
in vitro differentiated cells
pancreatic endoderm
4
9
embryonic stem cell
2
1
3
chondrocyte
5
definitive endodermal cell
2
3
endocrine cell
2
3
+ See 8 more…
cell line
EndoC_BH1
3
2
1
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