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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
91
ChIP-seq
24
DNase-seq
1
WGBS
1
single cell RNA-seq
Assay category
91
DNA binding
24
DNA accessibility
1
DNA methylation
1
Transcription
Target of assay
61
transcription factor
25
RNA binding protein
19
histone
19
histone modification
16
recombinant protein
11
control
11
narrow histone mark
8
broad histone mark
7
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
116
bam
104
bigWig
103
bed narrowPeak
103
bigBed narrowPeak
62
fastq
24
bed bed3+
24
bed broadPeak
24
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
csv
Organism
117
Homo sapiens
Biosample type
tissue
61
cell line
56
primary cell
Organ
48
liver
20
epithelium
17
connective tissue
15
blood
15
bodily fluid
13
kidney
11
musculature of body
8
heart
5
brain
4
eye
4
vasculature
2
blood vessel
Project
117
AMP
Genome assembly (visualization)
104
GRCh38
94
hg19
Lab
117
AMP-T2D consortium
Audit category:
25
inconsistent ontology term
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
117 results
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ChIP-seq
DNase-seq
WGBS
single cell RNA-seq
cell line
HepG2
45
1
GM12878
15
primary cell
cardiac fibroblast
5
3
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac muscle cell
3
1
epithelial cell of proximal tubule
3
1
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