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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
107
total RNA-seq
27
snATAC-seq
16
ATAC-seq
14
pCHi-C
12
single cell RNA-seq
9
ChIP-seq
6
WGBS
3
Hi-C
Assay category
119
Transcription
43
DNA accessibility
9
DNA binding
6
DNA methylation
3
3D chromatin structure
Target of assay
5
transcription factor
3
control
1
histone
1
histone modification
1
narrow histone mark
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
127
bam
124
tsv
116
bigWig
45
fastq
16
bed narrowPeak
8
tagAlign
5
bedpe bed3+
4
bed bedgraph
3
hic
2
bed bed3
2
bed bed3+
2
ibed
Organism
194
Homo sapiens
Biosample type
tissue
107
cell line
49
primary cell
34
in vitro differentiated cells
4
stem cell
Organ
67
blood vessel
67
vasculature
66
artery
66
heart
38
epithelium
37
pancreas
12
connective tissue
2
kidney
2
liver
1
mammary gland
1
vein
Project
146
AMP
45
HPAP
3
T1D
Genome assembly (visualization)
136
hg19
123
GRCh38
Lab
149
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
59
inconsistent ontology term
27
audit script error
1
inconsistent replicate
biosample_type!
tissue
BIOSAMPLE
ASSAY
194 results
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total RNA-seq
snATAC-seq
ATAC-seq
pCHi-C
single cell RNA-seq
ChIP-seq
WGBS
Hi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
28
2
1
HepG2
1
1
early embryonic cell
2
iPSC derived cell line
2
+ See 4 more…
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
endothelial cell of umbilical vein
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
cardiomyocytes (cardiac muscle cell)
1
2
1
lymphocyte of B lineage (iPSC)
1
1
1
embryonic stem cell
1
stem cell
mesenchymal stem cell
1
mesendoderm
1
neural progenitor cell (neural stem cell)
1
trophoblast
1
See all biosamples
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