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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
total RNA-seq
44
ChIP-seq
21
ATAC-seq
Assay category
88
Transcription
44
DNA binding
21
DNA accessibility
Target of assay
22
histone
22
histone modification
16
transcription factor
12
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
315
November, 2017
153
May, 2021
122
February, 2021
86
August, 2021
68
August, 2017
61
November, 2018
46
December, 2017
39
February, 2018
38
October, 2019
28
December, 2018
23
January, 2019
23
March, 2020
22
February, 2023
21
November, 2019
6
January, 2018
6
November, 2020
4
March, 2023
2
December, 2019
1
August, 2018
1
May, 2020
1
October, 2022
Available data
94
bigWig
90
bam
83
tsv
6
bed narrowPeak
6
tagAlign
Organism
153
Homo sapiens
Biosample type
primary cell
132
in vitro differentiated cells
tissue
21
cell line
Organ
26
epithelium
24
pancreas
2
embryo
1
connective tissue
1
heart
Project
152
AMP
1
T1D
Genome assembly (visualization)
94
hg19
89
GRCh38
Lab
106
AMP-T2D consortium
47
Kyle Gaulton, UCSD
Audit category:
89
inconsistent ontology term
biosample_type!
tissue
primary cell
BIOSAMPLE
ASSAY
153 results
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total RNA-seq
ChIP-seq
ATAC-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
5
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
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cell line
EndoC_BH1
4
1
16
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