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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
total RNA-seq
44
ChIP-seq
Assay category
88
Transcription
44
DNA binding
DNA accessibility
Target of assay
22
histone
22
histone modification
16
transcription factor
12
narrow histone mark
10
broad histone mark
6
control
5
RNA binding protein
Date released
315
November, 2017
132
May, 2021
109
February, 2021
74
August, 2021
67
August, 2017
61
November, 2018
46
December, 2017
39
February, 2018
32
October, 2019
28
December, 2018
23
January, 2019
21
March, 2020
15
November, 2019
10
February, 2023
6
November, 2020
5
January, 2018
4
March, 2023
2
December, 2019
1
August, 2018
1
May, 2020
1
October, 2022
Available data
90
bam
89
bigWig
83
tsv
6
bed narrowPeak
6
tagAlign
Organism
132
Homo sapiens
Biosample type
primary cell
127
in vitro differentiated cells
tissue
5
cell line
Organ
10
epithelium
8
pancreas
2
embryo
1
connective tissue
1
heart
Project
131
AMP
1
T1D
Genome assembly (visualization)
89
GRCh38
89
hg19
Lab
90
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Audit category:
73
inconsistent ontology term
biosample_type!
tissue
primary cell
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
132 results
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total RNA-seq
ChIP-seq
in vitro differentiated cells
cardiomyocytes
59
3
embryonic stem cell
5
37
induced pluripotent stem cell
9
pancreatic PP cell
3
cardiac fibroblast
1
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cell line
EndoC_BH1
4
1
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