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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
46
ChIP-seq
41
WGBS
39
ATAC-seq
33
single cell RNA-seq
21
snATAC-seq
Assay category
60
DNA accessibility
46
DNA binding
41
DNA methylation
33
Transcription
Target of assay
26
histone
26
histone modification
14
narrow histone mark
12
broad histone mark
11
transcription factor
9
control
2
RNA binding protein
1
chromatin remodeller
Date released
359
May, 2021
324
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
55
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
31
July, 2019
28
December, 2018
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
134
zippedFastqFolder
46
bam
46
fastq
36
bed narrowPeak
36
bigWig
15
bed bed3+
14
bigBed narrowPeak
Organism
180
Homo sapiens
Biosample type
134
primary cell
tissue
43
in vitro differentiated cells
3
stem cell
Organ
99
epithelium
80
pancreas
15
liver
13
embryo
Project
134
HPAP
46
AMP
Genome assembly (visualization)
41
GRCh38
41
hg19
Lab
134
Klaus Kaestner, Upenn
46
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
11
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
180 results
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Clear Filters
ChIP-seq
WGBS
ATAC-seq
single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
25
22
pancreatic beta cell
16
13
pancreatic acinar cell
4
in vitro differentiated cells
hepatocyte
15
pancreatic endoderm
9
Posterior foregut
5
definitive endodermal cell
5
primitive gut cell
5
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stem cell
hESC
3
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