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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
Hi-C
2
ATAC-seq
2
DNase-seq
Assay category
4
3D chromatin structure
4
DNA accessibility
Date released
134
May, 2022
120
May, 2021
110
February, 2023
59
September, 2020
58
May, 2020
50
February, 2021
41
August, 2021
17
March, 2020
15
August, 2017
13
July, 2019
8
January, 2021
8
October, 2019
7
August, 2020
6
January, 2018
6
November, 2020
5
March, 2023
4
October, 2022
2
December, 2019
1
August, 2018
1
December, 2018
1
November, 2017
1
November, 2018
1
November, 2019
1
September, 2018
Available data
bam
47
bigWig
38
bed narrowPeak
23
bigBed narrowPeak
8
tsv
5
bed broadPeak
5
bigBed broadPeak
4
bed bed3+
3
hic
2
bedpe bed3+
1
hdf5
1
tar
Organism
8
Homo sapiens
Biosample type
tissue
4
in vitro differentiated cells
3
primary cell
1
cell line
Organ
3
epithelium
2
connective tissue
2
kidney
1
blood vessel
1
pancreas
1
vasculature
1
vein
Project
8
AMP
Genome assembly (visualization)
6
hg19
1
GRCh38
Lab
8
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
1
audit script error
Audit category:
1
inconsistent assembly
biosample_type!
tissue
files.file_type!
bam
BIOSAMPLE
ASSAY
8 results
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Clear Filters
Hi-C
ATAC-seq
DNase-seq
in vitro differentiated cells
adipocyte
2
cardiac precursors (cardiac muscle cell)
1
cardiomyocytes (cardiac muscle cell)
1
primary cell
endothelial cell of umbilical vein
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
cell line
Panc1
1
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