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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
25
DNase-seq
Assay category
73
DNA binding
25
DNA accessibility
Target of assay
46
transcription factor
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
6
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
58
November, 2017
19
June, 2019
15
August, 2017
5
October, 2019
1
November, 2020
Available data
1468
bam
1377
bigWig
972
fastq
822
bed narrowPeak
521
tsv
470
bigBed narrowPeak
160
tagAlign
153
zippedFastqFolder
98
bed broadPeak
98
bigBed broadPeak
60
bed bed3+
13
bedpe bed3+
12
hic
10
bed bedMethyl
10
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
4
tar
4
txt
3
cool
2
csv
2
hdf5
2
ibed
1
vcf
Organism
98
Homo sapiens
Biosample type
tissue
59
cell line
38
primary cell
1
in vitro differentiated cells
Organ
60
liver
22
epithelium
12
vasculature
brain
10
kidney
8
blood vessel
7
connective tissue
4
vein
3
heart
1
eye
1
musculature of body
1
pancreas
Project
98
AMP
Genome assembly (visualization)
91
hg19
80
GRCh38
Lab
98
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
13
inconsistent control read length
1
inconsistent assembly
biosample_type!
tissue
organ_slims!
brain
BIOSAMPLE
ASSAY
98 results
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ChIP-seq
DNase-seq
cell line
HepG2
58
Panc1
1
primary cell
skeletal muscle myoblast
13
1
endothelial cell of umbilical vein
2
2
cardiac fibroblast
3
glomerular visceral epithelial cell
2
kidney tubule cell
2
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in vitro differentiated cells
adipocyte
1
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