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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
total RNA-seq
24
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
80
Transcription
24
DNA accessibility
Date released
May, 2021
315
November, 2017
170
February, 2021
148
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
90
August, 2021
73
September, 2018
72
October, 2019
62
November, 2018
59
September, 2020
50
June, 2019
48
July, 2018
46
December, 2017
43
April, 2018
39
February, 2018
28
December, 2018
24
July, 2019
24
March, 2020
23
January, 2019
21
November, 2019
12
November, 2020
8
January, 2021
7
August, 2020
7
December, 2019
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
October, 2018
Available data
76
fastq
12
tsv
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
109
Homo sapiens
Biosample type
tissue
88
primary cell
16
in vitro differentiated cells
6
cell line
Organ
38
epithelium
38
pancreas
13
connective tissue
Project
76
HPAP
29
AMP
5
T1D
Genome assembly (visualization)
12
hg19
Lab
76
Klaus Kaestner, Upenn
26
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
biosample_type!
tissue
organ_slims!
brain
month_released!
May, 2021
BIOSAMPLE
ASSAY
110 results
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Clear Filters
total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR genome editing followed by sgRNA sequencing
primary cell
exocrine cell
39
pancreatic alpha cell
27
pancreatic beta cell
10
gabaergic neuron
3
glutamatergic neuron
3
+ See 2 more…
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
+ See 2 more…
cell line
EndoC_BH1
3
2
1
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