Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
19
ATAC-seq
19
total RNA-seq
6
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
1
RRBS
1
small RNA-seq
Assay category
79
DNA binding
25
DNA accessibility
24
Transcription
1
DNA methylation
Target of assay
45
histone
45
histone modification
24
broad histone mark
23
transcription factor
20
narrow histone mark
11
control
5
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
16
June, 2019
13
February, 2023
11
February, 2021
7
July, 2019
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
94
bam
87
bigWig
61
bed narrowPeak
58
fastq
21
tsv
19
bed bed3+
17
bigBed narrowPeak
14
tagAlign
6
bed bed3
6
bed broadPeak
6
bigBed broadPeak
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
Organism
135
Homo sapiens
Biosample type
tissue
97
in vitro differentiated cells
37
primary cell
1
stem cell
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
134
AMP
1
T1D
Genome assembly (visualization)
105
hg19
85
GRCh38
Lab
130
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
tissue
organ_slims!
brain
BIOSAMPLE
ASSAY
135 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
67
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
2
5
1
1
mesenchymal stem cell
7
pancreatic stellate cell
4
mesenchymal stem cell of adipose
1
1
+ See 6 more…
stem cell
mesenchymal stem cell
1
See all biosamples
Download