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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
total RNA-seq
24
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
43
Transcription
24
DNA accessibility
Date released
333
May, 2021
318
November, 2017
148
May, 2020
138
February, 2021
98
August, 2017
84
August, 2021
72
February, 2023
62
November, 2018
54
May, 2022
40
September, 2020
39
February, 2018
37
October, 2019
35
June, 2019
28
December, 2018
27
December, 2017
23
January, 2019
18
July, 2019
18
March, 2020
15
July, 2018
12
September, 2018
10
April, 2018
8
January, 2021
6
January, 2018
6
November, 2020
5
March, 2023
5
November, 2019
2
December, 2019
2
June, 2018
1
August, 2018
1
October, 2022
Available data
39
fastq
12
tsv
5
bed bed3
4
bed bed3+
3
bed bedgraph
3
bigWig
3
txt
2
bed narrowPeak
Organism
72
Homo sapiens
Biosample type
tissue
51
primary cell
16
in vitro differentiated cells
5
cell line
Organ
epithelium
38
pancreas
13
connective tissue
Project
39
HPAP
28
AMP
5
T1D
Genome assembly (visualization)
12
hg19
Lab
39
Klaus Kaestner, Upenn
25
AMP-T2D consortium
5
Kyle Gaulton, UCSD
3
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
biosample_type!
tissue
organ_slims!
epithelium
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
exocrine cell
39
gabaergic neuron
3
glutamatergic neuron
3
microglial cell/astrocyte
3
oligodendrocyte
3
in vitro differentiated cells
chondrocyte
5
immature adipocyte
2
2
adipocyte
1
1
preadipocyte
1
1
Progenitor cell of Hypothalamus (neural progenitor cell)
1
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cell line
EndoC_BH1
3
2
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