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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
23
ChIP-seq
5
ATAC-seq
5
total RNA-seq
3
Hi-C
1
DNase-seq
Assay category
23
DNA binding
6
DNA accessibility
5
Transcription
3
3D chromatin structure
Target of assay
9
control
7
histone
7
histone modification
7
recombinant protein
7
transcription factor
4
broad histone mark
3
narrow histone mark
Date released
333
May, 2021
318
November, 2017
148
May, 2020
138
February, 2021
98
August, 2017
84
August, 2021
72
February, 2023
62
November, 2018
54
May, 2022
40
September, 2020
39
February, 2018
37
October, 2019
35
June, 2019
28
December, 2018
27
December, 2017
23
January, 2019
18
July, 2019
18
March, 2020
15
July, 2018
12
September, 2018
10
April, 2018
8
January, 2021
6
January, 2018
6
November, 2020
5
March, 2023
5
November, 2019
2
December, 2019
2
June, 2018
1
August, 2018
1
October, 2022
Available data
32
bam
22
bigWig
17
bed narrowPeak
9
bigBed narrowPeak
5
tsv
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed broadPeak
1
bigBed broadPeak
1
hdf5
Organism
37
Homo sapiens
Biosample type
tissue
28
cell line
8
in vitro differentiated cells
1
primary cell
Organ
epithelium
26
kidney
21
blood vessel
21
vasculature
21
vein
15
pancreas
2
connective tissue
1
liver
Project
37
AMP
Genome assembly (visualization)
27
hg19
23
GRCh38
Lab
37
AMP-T2D consortium
Audit category:
20
inconsistent ontology term
Audit category:
1
inconsistent assembly
biosample_type!
tissue
organ_slims!
epithelium
BIOSAMPLE
ASSAY
37 results
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Clear Filters
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
DNase-seq
cell line
Panc1
13
1
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
1
1
1
cardiomyocytes (cardiac muscle cell)
1
1
1
adipocyte
2
primary cell
Heart fetal (cardiac muscle cell)
1
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