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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
101
total RNA-seq
27
snATAC-seq
13
ATAC-seq
12
single cell RNA-seq
8
ChIP-seq
6
WGBS
1
pCHi-C
Assay category
113
Transcription
40
DNA accessibility
8
DNA binding
6
DNA methylation
Target of assay
5
transcription factor
3
control
Date released
359
May, 2021
168
February, 2021
147
May, 2020
134
May, 2022
127
August, 2017
110
February, 2023
73
September, 2018
71
October, 2019
59
September, 2020
55
August, 2021
53
June, 2019
48
July, 2018
43
April, 2018
39
February, 2018
31
December, 2017
29
July, 2019
27
December, 2018
24
March, 2020
21
November, 2019
18
January, 2019
16
November, 2018
12
November, 2020
9
November, 2017
8
January, 2021
7
August, 2020
6
January, 2018
5
March, 2023
5
May, 2019
5
September, 2017
4
August, 2018
4
October, 2022
3
June, 2018
2
December, 2019
2
October, 2018
Available data
119
bam
107
bigWig
107
tsv
45
fastq
14
bed narrowPeak
8
tagAlign
4
bed bedgraph
1
bed bed3
1
bed bed3+
Organism
168
Homo sapiens
Biosample type
tissue
94
cell line
48
primary cell
26
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
32
pancreas
11
connective tissue
liver
Project
123
AMP
45
HPAP
Genome assembly (visualization)
120
hg19
115
GRCh38
Lab
123
AMP-T2D consortium
45
Klaus Kaestner, Upenn
Audit category:
44
inconsistent ontology term
27
audit script error
biosample_type!
tissue
organ_slims!
liver
BIOSAMPLE
ASSAY
168 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
EndoC_BH1
26
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
pancreatic alpha cell
6
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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