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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
total RNA-seq
27
snATAC-seq
14
ATAC-seq
12
single cell RNA-seq
8
ChIP-seq
2
pCHi-C
Assay category
87
Transcription
41
DNA accessibility
8
DNA binding
Target of assay
5
transcription factor
3
control
Date released
335
May, 2021
324
November, 2017
148
May, 2020
138
February, 2021
88
August, 2021
86
August, 2017
72
February, 2023
62
November, 2018
57
October, 2019
55
June, 2019
54
May, 2022
46
December, 2017
40
September, 2020
39
February, 2018
31
July, 2019
28
December, 2018
23
January, 2019
19
March, 2020
11
July, 2018
10
April, 2018
8
January, 2021
7
December, 2019
6
January, 2018
6
November, 2020
5
March, 2023
5
May, 2019
5
November, 2019
2
June, 2018
1
August, 2018
1
October, 2022
1
September, 2018
Available data
94
bam
81
bigWig
75
tsv
39
fastq
15
bed narrowPeak
8
tagAlign
4
bed bedgraph
2
bed bed3
2
bed bed3+
Organism
138
Homo sapiens
Biosample type
tissue
70
cell line
42
primary cell
26
in vitro differentiated cells
Organ
66
artery
66
blood vessel
66
heart
66
vasculature
32
epithelium
pancreas
11
connective tissue
2
liver
Project
99
AMP
39
HPAP
Genome assembly (visualization)
96
hg19
90
GRCh38
Lab
99
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
27
audit script error
18
inconsistent ontology term
1
inconsistent replicate
biosample_type!
tissue
organ_slims!
pancreas
BIOSAMPLE
ASSAY
138 results
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Clear Filters
total RNA-seq
snATAC-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
pCHi-C
cell line
smooth muscle cell of the coronary artery
52
8
6
HepG2
1
1
iPSC derived cell line
2
primary cell
Langerhans cell
27
12
osteoblast
1
1
1
in vitro differentiated cells
cardiac precursors (cardiac muscle cell)
18
adipocyte
4
4
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