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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
5
DNase-seq
3
Hi-C
3
single cell RNA-seq
1
total RNA-seq
Assay category
9
DNA binding
5
DNA accessibility
4
Transcription
3
3D chromatin structure
DNA methylation
Target of assay
6
control
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
9
November, 2017
7
July, 2019
5
June, 2019
Available data
21
bigWig
18
bam
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
11
bigBed narrowPeak
9
fastq
8
bed bed3+
4
tsv
3
hdf5
Organism
21
Homo sapiens
Biosample type
tissue
21
primary cell
Organ
456
epithelium
428
liver
394
pancreas
136
connective tissue
102
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
52
kidney
37
embryo
22
vein
20
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
21
AMP
Genome assembly (visualization)
21
hg19
15
GRCh38
Lab
21
AMP-T2D consortium
biosample_type!
tissue
assay_slims!
DNA methylation
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
total RNA-seq
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
brain pericyte
1
1
cerebellar granule cell
2
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