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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
5
DNase-seq
3
single cell RNA-seq
1
RRBS
Assay category
9
DNA binding
5
DNA accessibility
3
Transcription
1
DNA methylation
Target of assay
6
control
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
9
November, 2017
5
June, 2019
4
July, 2019
Available data
20
bigWig
17
bam
11
bed broadPeak
11
bed narrowPeak
11
bigBed broadPeak
11
bigBed narrowPeak
9
fastq
8
bed bed3+
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
18
Homo sapiens
Biosample type
tissue
18
primary cell
Organ
507
epithelium
440
pancreas
429
liver
136
connective tissue
101
vasculature
95
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
18
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
18
AMP
Genome assembly (visualization)
18
hg19
14
GRCh38
Lab
18
AMP-T2D consortium
biosample_type!
tissue
files.file_type!
hdf5
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
DNase-seq
single cell RNA-seq
RRBS
primary cell
choroid plexus epithelial cell
3
1
1
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
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