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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
Assay category
9
DNA binding
3
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
control
3
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
9
November, 2017
7
July, 2019
June, 2019
Available data
15
bigWig
12
bam
9
fastq
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
3
bed bed3+
3
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
16
Homo sapiens
Biosample type
tissue
16
primary cell
Organ
489
epithelium
441
pancreas
428
liver
120
connective tissue
99
vasculature
95
blood vessel
72
heart
69
blood
69
bodily fluid
68
artery
42
kidney
37
embryo
22
vein
16
brain
3
adipose tissue
3
musculature of body
1
bone element
1
bone marrow
1
eye
1
mammary gland
1
pericardium
Project
16
AMP
Genome assembly (visualization)
16
hg19
9
GRCh38
Lab
16
AMP-T2D consortium
biosample_type!
tissue
month_released!
June, 2019
BIOSAMPLE
ASSAY
16 results
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ChIP-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
cerebellar granule cell
2
Purkinje cell
1
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