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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
9
ChIP-seq
3
Hi-C
single cell RNA-seq
1
RRBS
Assay category
9
DNA binding
3
3D chromatin structure
1
DNA methylation
Target of assay
3
RNA binding protein
3
control
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
9
November, 2017
June, 2019
4
July, 2019
Available data
12
bigWig
9
bam
9
fastq
6
bed broadPeak
6
bed narrowPeak
6
bigBed broadPeak
6
bigBed narrowPeak
3
bed bed3+
3
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
Organism
13
Homo sapiens
Biosample type
tissue
13
primary cell
Organ
428
liver
419
epithelium
367
pancreas
116
connective tissue
99
vasculature
95
blood vessel
72
heart
69
blood
69
bodily fluid
68
artery
42
kidney
37
embryo
22
vein
13
brain
3
adipose tissue
3
musculature of body
1
bone element
1
bone marrow
1
eye
1
mammary gland
1
pericardium
Project
13
AMP
Genome assembly (visualization)
13
hg19
6
GRCh38
Lab
13
AMP-T2D consortium
biosample_type!
tissue
month_released!
June, 2019
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
Hi-C
RRBS
primary cell
astrocyte of the cerebellum
3
1
brain microvascular endothelial cell
3
1
choroid plexus epithelial cell
3
1
brain pericyte
1
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