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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
20
ChIP-seq
8
ATAC-seq
8
DNase-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
Assay category
60
Transcription
20
DNA binding
16
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
10
control
8
transcription factor
5
histone
5
histone modification
5
narrow histone mark
4
RNA binding protein
Date released
66
February, 2021
13
June, 2019
12
July, 2019
9
November, 2017
1
May, 2021
Available data
96
bam
87
bigWig
60
tsv
29
bed narrowPeak
17
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
11
bed bed3+
9
fastq
6
tagAlign
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
101
Homo sapiens
Biosample type
tissue
66
cell line
34
primary cell
1
in vitro differentiated cells
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
101
AMP
Genome assembly (visualization)
96
hg19
89
GRCh38
Lab
101
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
101 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
single cell RNA-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
cardiac fibroblast
5
3
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
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in vitro differentiated cells
cardiac fibroblast
1
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