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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
5
DNase-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
Assay category
6
DNA binding
5
DNA accessibility
3
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
control
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
7
July, 2019
6
November, 2017
5
June, 2019
Available data
17
bigWig
14
bam
8
bed bed3+
8
bed broadPeak
8
bed narrowPeak
8
bigBed broadPeak
8
bigBed narrowPeak
6
fastq
3
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
18
Homo sapiens
Biosample type
tissue
18
primary cell
Organ
501
epithelium
440
pancreas
374
liver
132
connective tissue
101
vasculature
96
blood vessel
79
heart
68
artery
59
blood
59
bodily fluid
53
kidney
37
embryo
22
vein
18
brain
14
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
18
AMP
Genome assembly (visualization)
18
hg19
11
GRCh38
Lab
18
AMP-T2D consortium
biosample_type!
tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
18 results
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ChIP-seq
DNase-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
cerebellar granule cell
2
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