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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
6
ChIP-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
Assay category
6
DNA binding
3
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
6
control
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
3
transcription factor
Date released
7
July, 2019
6
November, 2017
June, 2019
Available data
12
bigWig
9
bam
6
fastq
3
bed bed3+
3
bed broadPeak
3
bed narrowPeak
3
bigBed broadPeak
3
bigBed narrowPeak
3
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
13
Homo sapiens
Biosample type
tissue
13
primary cell
Organ
483
epithelium
440
pancreas
372
liver
116
connective tissue
97
vasculature
94
blood vessel
72
heart
68
artery
59
blood
59
bodily fluid
41
kidney
37
embryo
22
vein
13
brain
3
adipose tissue
3
musculature of body
1
bone element
1
bone marrow
1
eye
1
mammary gland
1
pericardium
Project
13
AMP
Genome assembly (visualization)
13
hg19
6
GRCh38
Lab
13
AMP-T2D consortium
biosample_type!
tissue
target.investigated_as!
RNA binding protein
month_released!
June, 2019
BIOSAMPLE
ASSAY
13 results
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ChIP-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
choroid plexus epithelial cell
2
1
cerebellar granule cell
2
Purkinje cell
1
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