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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
19
ATAC-seq
19
total RNA-seq
11
DNase-seq
7
single cell RNA-seq
4
pCHi-C
3
Hi-C
2
Capture-C
2
RRBS
1
small RNA-seq
Assay category
80
DNA binding
30
DNA accessibility
27
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
48
histone
48
histone modification
26
transcription factor
24
broad histone mark
23
narrow histone mark
17
control
RNA binding protein
2
chromatin remodeller
Date released
64
August, 2017
20
June, 2019
14
July, 2019
13
February, 2023
11
February, 2021
6
November, 2017
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
103
bam
99
bigWig
64
bed narrowPeak
60
fastq
27
bed bed3+
24
bigBed narrowPeak
24
tsv
14
bed broadPeak
14
bigBed broadPeak
14
tagAlign
6
bed bed3
4
bed bedgraph
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
148
Homo sapiens
Biosample type
tissue
93
in vitro differentiated cells
54
primary cell
1
stem cell
Organ
501
epithelium
440
pancreas
374
liver
132
connective tissue
101
vasculature
96
blood vessel
79
heart
68
artery
59
blood
59
bodily fluid
53
kidney
37
embryo
22
vein
18
brain
14
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
147
AMP
1
T1D
Genome assembly (visualization)
118
hg19
91
GRCh38
Lab
143
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
tissue
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
148 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
Hi-C
Capture-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
63
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
osteoblast
2
5
1
1
cardiac fibroblast
4
3
1
mesenchymal stem cell
7
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
+ See 13 more…
stem cell
mesenchymal stem cell
1
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