Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
5
DNase-seq
3
ChIP-seq
3
Hi-C
3
single cell RNA-seq
1
RRBS
Assay category
5
DNA accessibility
3
3D chromatin structure
3
DNA binding
3
Transcription
1
DNA methylation
Target of assay
6
control
RNA binding protein
3
histone
histone modification
3
narrow histone mark
3
transcription factor
Date released
7
July, 2019
5
June, 2019
3
November, 2017
Available data
14
bigWig
11
bam
8
bed bed3+
5
bed broadPeak
5
bed narrowPeak
5
bigBed broadPeak
5
bigBed narrowPeak
3
fastq
3
hdf5
3
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
15
Homo sapiens
Biosample type
tissue
15
primary cell
Organ
408
epithelium
362
pancreas
341
liver
87
connective tissue
84
vasculature
80
blood vessel
77
heart
68
artery
58
blood
58
bodily fluid
43
kidney
25
embryo
15
brain
7
vein
6
musculature of body
3
adipose tissue
3
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
15
AMP
Genome assembly (visualization)
15
hg19
8
GRCh38
Lab
15
AMP-T2D consortium
biosample_type!
tissue
target.investigated_as!
RNA binding protein
histone modification
BIOSAMPLE
ASSAY
15 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ChIP-seq
Hi-C
single cell RNA-seq
RRBS
primary cell
astrocyte of the cerebellum
1
1
1
brain microvascular endothelial cell
1
1
1
choroid plexus epithelial cell
1
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
See all biosamples
Download