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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
10
total RNA-seq
6
DNase-seq
4
single cell RNA-seq
3
pCHi-C
2
ATAC-seq
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
15
Transcription
12
DNA binding
8
DNA accessibility
1
3D chromatin structure
1
DNA methylation
Target of assay
8
histone
8
histone modification
4
broad histone mark
4
narrow histone mark
3
control
1
RNA binding protein
1
transcription factor
Date released
17
June, 2019
8
July, 2019
6
November, 2020
3
February, 2021
2
April, 2018
2
July, 2018
1
March, 2020
1
May, 2021
Available data
36
bam
32
bigWig
17
bed narrowPeak
16
tsv
15
bigBed narrowPeak
8
bed bed3+
6
bed broadPeak
6
bigBed broadPeak
3
fastq
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
Organism
40
Homo sapiens
Biosample type
tissue
in vitro differentiated cells
39
primary cell
1
stem cell
Organ
485
epithelium
438
pancreas
415
liver
103
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
55
kidney
40
connective tissue
22
vein
21
brain
14
musculature of body
8
embryo
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
39
AMP
1
T1D
Genome assembly (visualization)
34
hg19
32
GRCh38
Lab
39
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
14
inconsistent ontology term
biosample_type!
tissue
in vitro differentiated cells
BIOSAMPLE
ASSAY
40 results
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ChIP-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
ATAC-seq
Hi-C
RRBS
small RNA-seq
primary cell
cardiac fibroblast
5
3
1
osteoblast
5
1
1
2
mesenchymal stem cell
7
pancreatic stellate cell
4
brain pericyte
1
1
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stem cell
mesenchymal stem cell
1
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