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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
ChIP-seq
6
DNase-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
10
DNA accessibility
7
DNA binding
1
3D chromatin structure
Target of assay
6
transcription factor
1
control
Date released
7
August, 2017
5
June, 2019
4
February, 2023
2
August, 2021
1
February, 2021
1
July, 2019
1
November, 2020
Available data
95
bam
89
bigWig
62
bed narrowPeak
58
fastq
21
bed bed3+
21
tsv
18
bigBed narrowPeak
14
tagAlign
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
21
Homo sapiens
Biosample type
13
in vitro differentiated cells
8
primary cell
tissue
Organ
21
connective tissue
21
epithelium
10
kidney
8
brain
8
vasculature
7
liver
6
blood vessel
3
embryo
3
heart
2
pancreas
2
vein
1
eye
1
musculature of body
Project
21
AMP
Genome assembly (visualization)
20
hg19
13
GRCh38
Lab
19
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
4
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
DNase-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
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