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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
19
ATAC-seq
19
total RNA-seq
11
DNase-seq
7
single cell RNA-seq
4
pCHi-C
3
Hi-C
2
Capture-C
2
RRBS
1
small RNA-seq
Assay category
88
DNA binding
30
DNA accessibility
27
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
48
histone
48
histone modification
26
transcription factor
24
broad histone mark
23
narrow histone mark
17
control
8
RNA binding protein
2
chromatin remodeller
Date released
68
August, 2017
21
June, 2019
14
July, 2019
13
February, 2023
11
February, 2021
9
November, 2017
6
November, 2020
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2018
1
March, 2020
Available data
111
bam
107
bigWig
72
bed narrowPeak
67
fastq
28
bigBed narrowPeak
27
bed bed3+
24
tsv
17
bed broadPeak
17
bigBed broadPeak
14
tagAlign
6
bed bed3
4
bed bedgraph
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bedpe bed3+
Organism
156
Homo sapiens
Biosample type
tissue
97
in vitro differentiated cells
58
primary cell
1
stem cell
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
155
AMP
1
T1D
Genome assembly (visualization)
126
hg19
99
GRCh38
Lab
151
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
18
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
6
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
156 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
single cell RNA-seq
pCHi-C
Hi-C
Capture-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
67
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
+ See 2 more…
primary cell
cardiac fibroblast
5
3
1
osteoblast
2
5
1
1
mesenchymal stem cell
7
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
+ See 13 more…
stem cell
mesenchymal stem cell
1
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