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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
32
ChIP-seq
8
ATAC-seq
7
DNase-seq
4
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
54
Transcription
32
DNA binding
16
DNA accessibility
4
3D chromatin structure
2
DNA methylation
Target of assay
18
histone
18
histone modification
9
broad histone mark
9
narrow histone mark
7
control
7
transcription factor
3
RNA binding protein
Date released
66
February, 2021
21
October, 2019
8
June, 2019
6
July, 2019
6
November, 2017
1
March, 2020
Available data
102
bam
88
bigWig
54
tsv
36
bed narrowPeak
24
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
fastq
6
tagAlign
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
108
Homo sapiens
Biosample type
tissue
66
cell line
42
primary cell
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
108
AMP
Genome assembly (visualization)
99
hg19
89
GRCh38
Lab
108
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
108 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
retinal pigment epithelial cell
3
1
1
endothelial cell of coronary artery
1
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