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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
278
ChIP-seq
10
total RNA-seq
2
ATAC-seq
2
DNase-seq
1
WGBS
Assay category
278
DNA binding
10
Transcription
4
DNA accessibility
1
DNA methylation
Target of assay
247
transcription factor
81
recombinant protein
49
RNA binding protein
28
histone
28
histone modification
19
chromatin remodeller
15
broad histone mark
13
narrow histone mark
2
other context
2
other post-translational modification
Date released
217
November, 2017
45
November, 2018
14
December, 2017
5
December, 2019
5
January, 2019
3
August, 2021
2
June, 2019
1
February, 2021
1
October, 2019
Available data
293
bam
291
bigWig
282
bed narrowPeak
281
fastq
277
bigBed narrowPeak
46
bed broadPeak
46
bigBed broadPeak
12
tagAlign
10
tsv
5
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
293
Homo sapiens
Biosample type
268
cell line
tissue
14
in vitro differentiated cells
11
primary cell
Organ
294
epithelium
293
liver
249
pancreas
86
connective tissue
86
vasculature
82
blood vessel
75
heart
66
artery
54
blood
54
bodily fluid
40
kidney
29
embryo
14
brain
12
vein
11
musculature of body
3
eye
2
adipose tissue
1
pericardium
Project
293
AMP
Genome assembly (visualization)
357
hg19
293
GRCh38
Lab
293
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
22
inconsistent control read length
6
inconsistent control run_type
biosample_type!
tissue
BIOSAMPLE
ASSAY
293 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
261
5
1
1
in vitro differentiated cells
hepatocyte
14
primary cell
hepatocyte
3
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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