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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
total RNA-seq
101
ChIP-seq
90
ATAC-seq
74
single cell RNA-seq
47
WGBS
6
MeRIP-seq
5
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
DNase-seq
Assay category
101
DNA binding
Target of assay
78
histone
78
histone modification
41
narrow histone mark
37
broad histone mark
21
control
2
transcription factor
1
RNA binding protein
Date released
38
August, 2017
32
September, 2018
13
November, 2019
13
October, 2019
4
May, 2021
1
March, 2020
Available data
101
bam
79
bigWig
70
fastq
67
bed narrowPeak
6
bigBed narrowPeak
3
tagAlign
Organism
101
Homo sapiens
Biosample type
tissue
70
primary cell
28
cell line
3
in vitro differentiated cells
Organ
397
liver
129
epithelium
101
pancreas
79
connective tissue
60
blood
60
bodily fluid
29
vasculature
26
blood vessel
25
kidney
22
embryo
17
vein
11
heart
10
musculature of body
9
brain
6
artery
3
eye
Project
99
AMP
2
T1D
Genome assembly (visualization)
79
GRCh38
79
hg19
Lab
101
AMP-T2D consortium
Audit category:
15
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
tissue
BIOSAMPLE
ASSAY
101 results
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Clear Filters
ChIP-seq
primary cell
pancreatic endocrine cell
23
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
pancreatic acinar cell
8
cell line
EndoC_BH1
15
Panc1
13
in vitro differentiated cells
pancreatic PP cell
3
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