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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
29
ChIP-seq
8
ATAC-seq
2
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
29
DNA binding
9
DNA accessibility
2
3D chromatin structure
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
6
control
6
transcription factor
2
RNA binding protein
Date released
66
February, 2021
19
October, 2019
6
November, 2017
3
July, 2019
1
March, 2020
Available data
98
bam
85
bigWig
54
tsv
33
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
bed bed3+
6
fastq
6
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
95
Homo sapiens
Biosample type
tissue
66
cell line
29
primary cell
Organ
488
epithelium
439
pancreas
423
liver
116
connective tissue
95
vasculature
91
blood vessel
77
heart
69
blood
69
bodily fluid
68
artery
45
kidney
34
embryo
20
vein
13
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
95
AMP
Genome assembly (visualization)
88
hg19
80
GRCh38
Lab
95
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
95 results
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Clear Filters
total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
1
choroid plexus epithelial cell
3
1
brain microvascular endothelial cell
3
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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