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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
23
ChIP-seq
8
ATAC-seq
6
DNase-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
23
DNA binding
15
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
4
control
4
transcription factor
Date released
66
February, 2021
21
October, 2019
5
July, 2019
4
June, 2019
1
March, 2020
Available data
98
bam
85
bigWig
54
tsv
33
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
fastq
6
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
97
Homo sapiens
Biosample type
tissue
66
cell line
31
primary cell
Organ
252
epithelium
183
pancreas
97
vasculature
94
blood vessel
80
heart
79
connective tissue
68
artery
55
kidney
48
liver
22
vein
14
musculature of body
12
brain
10
embryo
9
blood
9
bodily fluid
5
eye
2
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
97
AMP
Genome assembly (visualization)
89
hg19
82
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
tissue
files.file_type!
fastq
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
17
2
2
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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