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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
89
ChIP-seq
54
total RNA-seq
9
ATAC-seq
8
snATAC-seq
6
DNase-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
89
DNA binding
54
Transcription
24
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
57
transcription factor
18
histone
18
histone modification
12
RNA binding protein
12
control
10
chromatin remodeller
9
broad histone mark
9
narrow histone mark
Date released
66
February, 2021
27
December, 2018
21
October, 2019
18
January, 2019
15
November, 2018
8
January, 2021
6
November, 2017
5
July, 2019
4
June, 2019
1
January, 2018
1
March, 2020
Available data
158
bam
140
bigWig
87
bed narrowPeak
75
bigBed narrowPeak
66
fastq
54
tsv
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
6
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
172
Homo sapiens
Biosample type
tissue
127
cell line
45
primary cell
Organ
509
epithelium
441
pancreas
430
liver
137
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
164
AMP
8
T1D
Genome assembly (visualization)
150
hg19
140
GRCh38
Lab
164
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent control
1
inconsistent ontology term
biosample_type!
tissue
BIOSAMPLE
ASSAY
172 results
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ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
6
52
8
GM12878
60
1
primary cell
endothelial cell of umbilical vein
17
2
2
1
peripheral blood mononuclear cell
8
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of coronary artery
1
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