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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
63
ChIP-seq
30
DNase-seq
Assay category
63
DNA binding
30
DNA accessibility
Target of assay
49
transcription factor
30
histone
30
histone modification
broad histone mark
14
narrow histone mark
9
RNA binding protein
5
chromatin remodeller
1
other context
1
other post-translational modification
Date released
56
November, 2017
24
June, 2019
9
August, 2017
3
October, 2019
1
November, 2020
Available data
1329
bam
1223
bigWig
908
fastq
666
bed narrowPeak
524
tsv
443
bigBed narrowPeak
153
zippedFastqFolder
93
bed broadPeak
93
bigBed broadPeak
89
tagAlign
62
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
93
Homo sapiens
Biosample type
tissue
51
cell line
41
primary cell
1
in vitro differentiated cells
Organ
52
liver
20
epithelium
11
brain
10
kidney
10
vasculature
7
connective tissue
6
blood vessel
3
heart
2
vein
1
eye
1
musculature of body
1
pancreas
Project
93
AMP
Genome assembly (visualization)
86
hg19
78
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
7
inconsistent control read length
biosample_type!
tissue
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
DNase-seq
cell line
HepG2
50
Panc1
1
primary cell
skeletal muscle myoblast
7
1
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cardiac fibroblast
3
choroid plexus epithelial cell
2
1
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in vitro differentiated cells
adipocyte
1
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