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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
397
ChIP-seq
32
DNase-seq
24
ATAC-seq
1
FAIRE-seq
Assay category
397
DNA binding
57
DNA accessibility
Target of assay
315
transcription factor
81
recombinant protein
79
histone
79
histone modification
71
RNA binding protein
41
narrow histone mark
38
broad histone mark
30
chromatin remodeller
2
other context
2
other post-translational modification
Date released
255
November, 2017
56
November, 2018
47
June, 2019
December, 2018
23
October, 2019
20
August, 2017
15
January, 2019
14
December, 2017
14
September, 2018
5
September, 2017
4
May, 2019
1
November, 2020
Available data
1347
bigWig
1319
bam
852
fastq
806
bed narrowPeak
521
tsv
454
bigBed narrowPeak
153
zippedFastqFolder
144
tagAlign
109
bed broadPeak
109
bigBed broadPeak
62
bed bed3+
13
bedpe bed3+
12
hic
11
bed bedMethyl
11
bigBed bedMethyl
7
bed bed3
7
bed bedgraph
5
hdf5
4
tar
4
txt
3
cool
2
csv
2
ibed
1
vcf
Organism
454
Homo sapiens
Biosample type
tissue
328
cell line
109
primary cell
17
in vitro differentiated cells
Organ
309
liver
76
epithelium
29
pancreas
27
blood
27
bodily fluid
21
vasculature
18
connective tissue
17
blood vessel
17
kidney
13
vein
11
brain
9
musculature of body
6
heart
3
eye
Project
454
AMP
Genome assembly (visualization)
443
hg19
416
GRCh38
Lab
454
AMP-T2D consortium
Audit category:
23
inconsistent ontology term
Audit category:
12
missing controlled_by
Audit category:
25
inconsistent control read length
9
inconsistent control run_type
2
inconsistent assembly
biosample_type!
tissue
target.investigated_as!
control
month_released!
December, 2018
BIOSAMPLE
ASSAY
454 results
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ChIP-seq
DNase-seq
ATAC-seq
FAIRE-seq
cell line
HepG2
293
GM12878
27
Panc1
6
1
glomerular visceral epithelial cell
1
primary cell
skeletal muscle myoblast
14
2
endothelial cell of umbilical vein
10
2
1
pancreatic beta cell
7
skeletal muscle satellite cell
7
cardiac fibroblast
3
3
+ See 24 more…
in vitro differentiated cells
hepatocyte
14
adipocyte
1
2
See all biosamples
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