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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
23
ChIP-seq
8
ATAC-seq
6
DNase-seq
4
Hi-C
1
FAIRE-seq
1
RRBS
Assay category
54
Transcription
23
DNA binding
15
DNA accessibility
4
3D chromatin structure
1
DNA methylation
Target of assay
17
histone
17
histone modification
9
broad histone mark
8
narrow histone mark
control
6
transcription factor
2
RNA binding protein
Date released
64
February, 2021
19
October, 2019
5
July, 2019
4
June, 2019
4
November, 2017
1
March, 2020
Available data
92
bam
83
bigWig
54
tsv
33
bed narrowPeak
21
bigBed narrowPeak
12
bed broadPeak
12
bigBed broadPeak
8
bed bed3+
4
fastq
4
tagAlign
2
hdf5
2
hic
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
tar
Organism
97
Homo sapiens
Biosample type
tissue
64
cell line
33
primary cell
Organ
479
epithelium
417
pancreas
368
liver
126
connective tissue
97
vasculature
92
blood vessel
76
heart
66
artery
63
blood
63
bodily fluid
49
kidney
30
embryo
20
vein
15
brain
12
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
97
AMP
Genome assembly (visualization)
93
hg19
86
GRCh38
Lab
97
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
biosample_type!
tissue
target.investigated_as!
control
BIOSAMPLE
ASSAY
97 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
cell line
smooth muscle cell of the coronary artery
52
4
8
primary cell
endothelial cell of umbilical vein
15
2
2
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
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