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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
ChIP-seq
19
ATAC-seq
19
total RNA-seq
7
DNase-seq
4
pCHi-C
4
single cell RNA-seq
2
Capture-C
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
26
DNA accessibility
24
Transcription
1
3D chromatin structure
1
DNA methylation
Date released
13
February, 2023
11
February, 2021
8
July, 2019
6
November, 2020
5
June, 2019
4
August, 2021
2
April, 2018
2
July, 2018
2
May, 2021
2
October, 2019
1
August, 2017
1
August, 2018
1
March, 2020
Available data
33
bigWig
30
bam
21
tsv
14
bed bed3+
11
bed narrowPeak
9
bigBed narrowPeak
7
bed broadPeak
7
bigBed broadPeak
6
bed bed3
5
fastq
4
bed bedgraph
1
bed bedMethyl
1
bedpe bed3+
1
bigBed bedMethyl
1
hdf5
Organism
58
Homo sapiens
Biosample type
tissue
30
in vitro differentiated cells
27
primary cell
1
stem cell
Organ
380
epithelium
340
pancreas
74
vasculature
71
blood vessel
69
heart
62
artery
58
connective tissue
33
liver
30
kidney
15
embryo
12
brain
9
blood
9
bodily fluid
5
vein
4
musculature of body
3
adipose tissue
2
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
57
AMP
1
T1D
Genome assembly (visualization)
50
hg19
29
GRCh38
Lab
53
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
1
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
biosample_type!
tissue
target.investigated_as!
histone
assay_title!
ChIP-seq
BIOSAMPLE
ASSAY
58 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
single cell RNA-seq
Capture-C
Hi-C
RRBS
small RNA-seq
in vitro differentiated cells
adipocyte
8
5
1
1
chondrocyte
5
immature adipocyte
2
2
osteoblast
1
1
preadipocyte
1
1
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primary cell
osteoblast
2
5
1
1
cardiac fibroblast
3
1
pancreatic stellate cell
4
brain pericyte
1
1
mesenchymal stem cell of adipose
1
1
+ See 6 more…
stem cell
mesenchymal stem cell
1
See all biosamples
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