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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
10
ChIP-seq
8
ATAC-seq
4
DNase-seq
4
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
13
DNA accessibility
10
DNA binding
4
3D chromatin structure
Target of assay
histone
16
histone modification
9
broad histone mark
7
narrow histone mark
5
control
5
transcription factor
1
RNA binding protein
Date released
66
February, 2021
6
October, 2019
4
July, 2019
2
June, 2019
2
November, 2017
1
March, 2020
Available data
77
bam
67
bigWig
54
tsv
18
bed narrowPeak
6
bed bed3+
6
bigBed narrowPeak
6
tagAlign
5
bed broadPeak
5
bigBed broadPeak
2
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
81
Homo sapiens
Biosample type
tissue
66
cell line
15
primary cell
Organ
416
epithelium
397
liver
363
pancreas
92
connective tissue
86
vasculature
81
blood vessel
78
heart
68
artery
68
blood
68
bodily fluid
45
kidney
25
embryo
18
brain
7
vein
6
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
81
AMP
Genome assembly (visualization)
76
hg19
71
GRCh38
Lab
81
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
81 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
2
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
kidney capillary endothelial cell
1
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