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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
54
total RNA-seq
9
ChIP-seq
8
ATAC-seq
4
Hi-C
1
FAIRE-seq
Assay category
54
Transcription
9
DNA accessibility
9
DNA binding
4
3D chromatin structure
Target of assay
histone
13
histone modification
7
broad histone mark
6
narrow histone mark
5
control
4
transcription factor
Date released
66
February, 2021
4
July, 2019
4
October, 2019
1
March, 2020
1
November, 2017
Available data
77
bam
67
bigWig
54
tsv
18
bed narrowPeak
6
bed bed3+
6
bigBed narrowPeak
6
tagAlign
bed broadPeak
5
bigBed broadPeak
2
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
76
Homo sapiens
Biosample type
tissue
66
cell line
10
primary cell
Organ
398
epithelium
362
pancreas
351
liver
85
connective tissue
78
vasculature
76
blood vessel
75
heart
68
artery
68
blood
68
bodily fluid
35
kidney
25
embryo
10
brain
5
musculature of body
5
vein
3
adipose tissue
3
eye
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
76
AMP
Genome assembly (visualization)
72
hg19
66
GRCh38
Lab
76
AMP-T2D consortium
Audit category:
1
audit script error
biosample_type!
tissue
target.investigated_as!
histone
files.file_type!
bed broadPeak
BIOSAMPLE
ASSAY
76 results
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total RNA-seq
ChIP-seq
ATAC-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
1
1
endothelial cell of coronary artery
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the coronary artery
1
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