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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
3
single cell RNA-seq
Assay category
70
DNA binding
3
Transcription
Target of assay
351
histone
351
histone modification
179
broad histone mark
171
narrow histone mark
73
control
59
transcription factor
21
RNA binding protein
4
chromatin remodeller
Date released
21
August, 2017
9
December, 2017
9
May, 2021
8
August, 2021
8
February, 2018
8
June, 2019
3
July, 2019
3
November, 2017
3
October, 2019
1
May, 2019
Available data
63
bam
39
fastq
12
tagAlign
10
bigWig
6
bed bed3+
3
tsv
Organism
73
Homo sapiens
Biosample type
tissue
cell line
37
in vitro differentiated cells
35
primary cell
1
stem cell
Organ
25
epithelium
13
pancreas
11
connective tissue
7
embryo
6
brain
4
vasculature
3
blood vessel
3
kidney
2
heart
2
liver
2
musculature of body
2
vein
1
eye
Project
73
AMP
Genome assembly (visualization)
16
hg19
9
GRCh38
Lab
65
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
7
inconsistent ontology term
biosample_type!
tissue
cell line
BIOSAMPLE
ASSAY
73 results
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ChIP-seq
single cell RNA-seq
in vitro differentiated cells
adipocyte
8
neural progenitor cell
7
embryonic stem cell
6
pancreatic endoderm
5
Hepatic endoderm
2
+ See 7 more…
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
CD8-positive, alpha-beta T cell
3
cardiac fibroblast
2
cerebellar granule cell
2
+ See 14 more…
stem cell
hESC
1
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