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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
3
MeRIP-seq
Assay category
12
DNA binding
Target of assay
58
histone
58
histone modification
34
broad histone mark
24
narrow histone mark
24
transcription factor
15
control
6
RNA binding protein
3
nucleotide modification
Date released
8
May, 2021
4
August, 2021
3
November, 2020
Available data
bam
95
fastq
23
bigWig
14
tagAlign
5
bed bed3+
3
tsv
Organism
15
Homo sapiens
Biosample type
tissue
7
cell line
5
in vitro differentiated cells
3
primary cell
Organ
4
liver
3
epithelium
3
pancreas
connective tissue
Project
15
AMP
Genome assembly (visualization)
3
hg19
Lab
8
Kyle Gaulton, UCSD
4
Bing Ren, UCSD
3
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
3
inconsistent ontology term
biosample_type!
tissue
files.file_type!
bam
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
15 results
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Clear Filters
ChIP-seq
MeRIP-seq
cell line
HepG2
4
EndoC_BH1
3
in vitro differentiated cells
embryonic stem cell
5
primary cell
CD8-positive, alpha-beta T cell
3
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