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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
407
ChIP-seq
104
total RNA-seq
13
ATAC-seq
1
DNase-seq
Assay category
407
DNA binding
104
Transcription
14
DNA accessibility
3D chromatin structure
Target of assay
352
transcription factor
85
recombinant protein
62
RNA binding protein
37
histone
37
histone modification
30
chromatin remodeller
19
narrow histone mark
18
broad histone mark
13
control
2
other context
2
other post-translational modification
Date released
266
November, 2017
92
February, 2021
54
November, 2018
27
December, 2018
22
August, 2021
20
January, 2019
18
October, 2019
13
November, 2019
7
March, 2020
5
May, 2021
1
January, 2018
Available data
516
bigWig
509
bam
400
bed narrowPeak
367
fastq
351
bigBed narrowPeak
105
tsv
59
bed broadPeak
59
bigBed broadPeak
17
tagAlign
3
tar
bed bed3+
1
bed bed3
Organism
525
Homo sapiens
Biosample type
1555
tissue
593
primary cell
525
cell line
268
in vitro differentiated cells
Organ
328
liver
64
artery
64
blood vessel
64
heart
64
vasculature
55
blood
55
bodily fluid
55
pancreas
51
epithelium
12
kidney
8
embryo
Project
521
AMP
4
T1D
Genome assembly (visualization)
525
hg19
462
GRCh38
Lab
511
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
59
inconsistent ontology term
1
inconsistent control
1
inconsistent replicate
Audit category:
12
missing controlled_by
Audit category:
26
inconsistent control read length
8
inconsistent control run_type
assay_slims!
3D chromatin structure
files.file_type!
bed bed3+
BIOSAMPLE
ASSAY
525 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
cell line
HepG2
322
5
1
smooth muscle cell of the coronary artery
4
52
8
GM12878
54
1
EndoC_BH1
13
33
3
H1-hESC
8
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