Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
392
ChIP-seq
Assay category
392
DNA binding
DNA accessibility
Target of assay
352
transcription factor
88
recombinant protein
63
RNA binding protein
35
histone
35
histone modification
30
chromatin remodeller
18
narrow histone mark
17
broad histone mark
2
other context
2
other post-translational modification
Date released
249
November, 2017
56
November, 2018
27
December, 2018
15
January, 2019
14
August, 2021
13
October, 2019
11
November, 2019
5
February, 2021
1
March, 2020
1
May, 2021
Available data
570
bam
517
bigWig
427
fastq
392
bed narrowPeak
353
bigBed narrowPeak
118
tsv
58
bed broadPeak
58
bigBed broadPeak
20
tagAlign
3
tar
2
bed bed3+
2
bedpe bed3+
2
hic
1
bed bedMethyl
1
bigBed bedMethyl
1
hdf5
1
txt
1
vcf
Organism
392
Homo sapiens
Biosample type
555
tissue
392
cell line
226
primary cell
110
in vitro differentiated cells
2
stem cell
Organ
307
liver
54
blood
54
bodily fluid
19
pancreas
13
epithelium
7
kidney
4
artery
4
blood vessel
4
heart
4
vasculature
Project
390
AMP
2
T1D
Genome assembly (visualization)
388
hg19
346
GRCh38
Lab
378
AMP-T2D consortium
14
Bing Ren, UCSD
Audit category:
20
inconsistent ontology term
1
inconsistent control
Audit category:
12
missing controlled_by
Audit category:
24
inconsistent control read length
8
inconsistent control run_type
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
392 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
307
GM12878
54
EndoC_BH1
13
Panc1
6
smooth muscle cell of the coronary artery
4
+ See 4 more…
See all biosamples
Download