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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
total RNA-seq
28
ChIP-seq
6
MeRIP-seq
2
Capture-C
2
Hi-C
1
CRISPR genome editing followed by sgRNA sequencing
Assay category
33
Transcription
28
DNA binding
DNA accessibility
2
3D chromatin structure
Target of assay
19
histone
19
histone modification
11
control
10
broad histone mark
9
narrow histone mark
3
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
26
February, 2021
15
November, 2019
14
October, 2019
6
November, 2020
5
May, 2021
3
March, 2020
2
August, 2021
1
February, 2023
Available data
61
bam
53
bigWig
33
tsv
19
bed narrowPeak
6
bigBed narrowPeak
1
bed bed3+
1
bedpe bed3+
1
hdf5
1
hic
Organism
71
Homo sapiens
Biosample type
423
tissue
275
primary cell
72
cell line
3
in vitro differentiated cells
Organ
400
liver
72
pancreas
60
blood
60
bodily fluid
59
epithelium
58
artery
58
blood vessel
58
heart
58
vasculature
18
kidney
8
embryo
1
mammary gland
Project
68
AMP
4
T1D
Genome assembly (visualization)
54
hg19
53
GRCh38
Lab
66
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
57
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
DNA accessibility
BIOSAMPLE
ASSAY
72 results
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total RNA-seq
ChIP-seq
MeRIP-seq
Capture-C
Hi-C
CRISPR genome editing followed by sgRNA sequencing
cell line
EndoC_BH1
33
15
6
2
1
1
Panc1
13
1
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